Appendices
Introduction to Ancient Metagenomics
Introduction
Citing this book
Authors
Foreword
Acknowledgements
Before you Start
Theory
1
Introduction to NGS Sequencing
2
Introduction to Ancient DNA
3
Introduction to Metagenomics
4
Introduction to Microbial Genomics
5
Introduction to Environmental DNA
Useful Skills
6
Introduction to the Command Line
7
Introduction to R and the Tidyverse
8
Introduction to Python and Pandas
9
Introduction to Git(Hub)
Ancient Metagenomics
10
Taxonomic Profiling, OTU Tables and Visualisation
11
De novo
Genome Assembly
12
Authentication
13
Contamination
Ancient Genomics
14
Genome Mapping
15
Phylogenomics
Ancient Metagenomic Resources
16
Accessing Ancient Metagenomic Data
17
Ancient Metagenomic Pipelines
Deprecated Chapters
18
Functional Profiling
Appendices
19
Chapter Writing Guidelines
20
Chapter Page Template
21
Chapter Checklist
Appendices
Important
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18
Functional Profiling
19
Chapter Writing Guidelines